Annihilation of calcium oscillations - Revision history

FelixMueller at 08:22, 27 July 2016

2016-07-27T08:22:39Z

← Older revision		Revision as of 08:22, 27 July 2016
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	\|nx = 4		\|nx = 4
	\|nw = 1		\|nw = 1
			\|nc = 1
	\|nre = 4		\|nre = 4
	}}		}}

FelixMueller: /* Source Code */

2016-06-28T07:49:10Z

Source Code

← Older revision		Revision as of 07:49, 28 June 2016
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	* [[:Category:Muscod \| Muscod code]] at [[Annihilation of calcium oscillations (Muscod)]]		* [[:Category:Muscod \| Muscod code]] at [[Annihilation of calcium oscillations (Muscod)]]
	* [[:Category:optimica \| optimica code]] at [[Annihilation of calcium oscillations (optimica)]]
	* [[:Category:JModelica \| JModelica code]] at [[Annihilation of calcium oscillations (jModelica)]]		* [[:Category:JModelica \| JModelica code]] at [[Annihilation of calcium oscillations (jModelica)]]

FelixMueller: /* Source Code */

2016-06-27T22:03:52Z

Source Code

← Older revision		Revision as of 22:03, 27 June 2016
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	* [[:Category:Muscod \| Muscod code]] at [[Annihilation of calcium oscillations (Muscod)]]		* [[:Category:Muscod \| Muscod code]] at [[Annihilation of calcium oscillations (Muscod)]]
	* [[:Category:optimica \| optimica]] at [[Annihilation of calcium oscillations (optimica)]]		* [[:Category:optimica \| optimica code]] at [[Annihilation of calcium oscillations (optimica)]]
	* [[:Category:JModelica \| JModelica]] at [[Annihilation of calcium oscillations (jModelica)]]		* [[:Category:JModelica \| JModelica code]] at [[Annihilation of calcium oscillations (jModelica)]]

	== Variants ==		== Variants ==

FelixMueller: /* Source Code */

2016-06-27T21:43:43Z

Source Code

← Older revision		Revision as of 21:43, 27 June 2016
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	* [[:Category:Muscod \| Muscod code]] at [[Annihilation of calcium oscillations (Muscod)]]		* [[:Category:Muscod \| Muscod code]] at [[Annihilation of calcium oscillations (Muscod)]]
	* [[:Category:optimica \| optimica]] at [[Annihilation of calcium oscillations (optimica)]]		* [[:Category:optimica \| optimica]] at [[Annihilation of calcium oscillations (optimica)]]
			* [[:Category:JModelica \| JModelica]] at [[Annihilation of calcium oscillations (jModelica)]]

	== Variants ==		== Variants ==

SebastianSager at 09:51, 28 January 2016

2016-01-28T09:51:36Z

← Older revision		Revision as of 09:51, 28 January 2016
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	<!--List of all categories this page is part of. List characterization of solution behavior, model properties, or presence of implementation details (e.g., AMPL for AMPL model) here -->		<!--List of all categories this page is part of. List characterization of solution behavior, model properties, or presence of implementation details (e.g., AMPL for AMPL model) here -->
			[[Category:Medicine]]
	[[Category:MIOCP]]		[[Category:MIOCP]]
	[[Category:ODE model]]		[[Category:ODE model]]

SebastianSager: Moved C to Muscod

2016-01-28T09:11:15Z

Moved C to Muscod

← Older revision		Revision as of 09:11, 28 January 2016
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	== Source Code ==		== Source Code ==

	* [[:Category:C \| C code]] at [[Annihilation of calcium oscillations (C)]]		* [[:Category:Muscod \| Muscod code]] at [[Annihilation of calcium oscillations (Muscod)]]
	* [[:Category:optimica \| optimica]] at [[Annihilation of calcium oscillations (optimica)]]		* [[:Category:optimica \| optimica]] at [[Annihilation of calcium oscillations (optimica)]]

SebastianSager: corrected citations

2016-01-19T14:18:22Z

corrected citations

← Older revision		Revision as of 14:18, 19 January 2016
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	Here the differential states <math>(x_0, x_1, x_2, x_3)</math> describe concentrations of activated G-proteins, active phospholipase C, intracellular calcium, and intra-ER calcium, respectively.		Here the differential states <math>(x_0, x_1, x_2, x_3)</math> describe concentrations of activated G-proteins, active phospholipase C, intracellular calcium, and intra-ER calcium, respectively.

	Modeling details including a comprehensive discussion of parameter values and the dynamical behavior observed in simulations with a comparison to experimental observations can be found in \<bib id\=\"Kummer2000\" \/\>. In the given equations that stem from \<bib id\=\"Lebiedz2005\" \/\>, the model is identical to the one derived there, except for an additional first-order leakage flow of calcium from the ER back to the cytoplasm, which is modeled by <math>\frac{x_3}{10}</math> in equations 3 and 4. It reproduces well experimental observations of cytoplasmic calcium oscillations as well as bursting behavior and in particular the frequency encoding of the triggering stimulus strength, which is a well known mechanism for signal processing in cell biology.		Modeling details including a comprehensive discussion of parameter values and the dynamical behavior observed in simulations with a comparison to experimental observations can be found in <bib id="Kummer2000" />. In the given equations that stem from <bib id="Lebiedz2005" />, the model is identical to the one derived there, except for an additional first-order leakage flow of calcium from the ER back to the cytoplasm, which is modeled by <math>\frac{x_3}{10}</math> in equations 3 and 4. It reproduces well experimental observations of cytoplasmic calcium oscillations as well as bursting behavior and in particular the frequency encoding of the triggering stimulus strength, which is a well known mechanism for signal processing in cell biology.

	== Parameters ==		== Parameters ==

JonasSchulze: Text replacement - "\(.*)\<\/bibref\>" to "\"

2015-12-30T20:28:25Z

Text replacement - "\<bibref\>(.*)\<\/bibref\>" to "\<bib id\=\"$1\" \/\>"

← Older revision		Revision as of 20:28, 30 December 2015
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	Here the differential states <math>(x_0, x_1, x_2, x_3)</math> describe concentrations of activated G-proteins, active phospholipase C, intracellular calcium, and intra-ER calcium, respectively.		Here the differential states <math>(x_0, x_1, x_2, x_3)</math> describe concentrations of activated G-proteins, active phospholipase C, intracellular calcium, and intra-ER calcium, respectively.

	Modeling details including a comprehensive discussion of parameter values and the dynamical behavior observed in simulations with a comparison to experimental observations can be found in <~~bibref>~~Kummer2000</~~bibref~~>. In the given equations that stem from <~~bibref>~~Lebiedz2005</~~bibref~~>, the model is identical to the one derived there, except for an additional first-order leakage flow of calcium from the ER back to the cytoplasm, which is modeled by <math>\frac{x_3}{10}</math> in equations 3 and 4. It reproduces well experimental observations of cytoplasmic calcium oscillations as well as bursting behavior and in particular the frequency encoding of the triggering stimulus strength, which is a well known mechanism for signal processing in cell biology.		Modeling details including a comprehensive discussion of parameter values and the dynamical behavior observed in simulations with a comparison to experimental observations can be found in \<bib id\=\"Kummer2000\" \/\>. In the given equations that stem from \<bib id\=\"Lebiedz2005\" \/\>, the model is identical to the one derived there, except for an additional first-order leakage flow of calcium from the ER back to the cytoplasm, which is modeled by <math>\frac{x_3}{10}</math> in equations 3 and 4. It reproduces well experimental observations of cytoplasmic calcium oscillations as well as bursting behavior and in particular the frequency encoding of the triggering stimulus strength, which is a well known mechanism for signal processing in cell biology.

	== Parameters ==		== Parameters ==

JonasSchulze: Text replacement - "" to ""

2015-12-30T20:28:25Z

Text replacement - "<bibreferences/>" to "<biblist />"

← Older revision		Revision as of 20:28, 30 December 2015
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	== References ==		== References ==
	<~~bibreferences~~/>		<biblist />

	<!--List of all categories this page is part of. List characterization of solution behavior, model properties, or presence of implementation details (e.g., AMPL for AMPL model) here -->		<!--List of all categories this page is part of. List characterization of solution behavior, model properties, or presence of implementation details (e.g., AMPL for AMPL model) here -->

SebastianSager at 15:00, 21 November 2010

2010-11-21T15:00:35Z

← Older revision		Revision as of 15:00, 21 November 2010
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	[[Category:Bang bang]]		[[Category:Bang bang]]
	[[Category:Systems biology]]		[[Category:Systems biology]]
			[[Category:Tracking objective]]

← Older revision		Revision as of 07:49, 28 June 2016
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	* [[:Category:Muscod \| Muscod code]] at [[Annihilation of calcium oscillations (Muscod)]]		* [[:Category:Muscod \| Muscod code]] at [[Annihilation of calcium oscillations (Muscod)]]
	* [[:Category:optimica \| optimica code]] at [[Annihilation of calcium oscillations (optimica)]]
	* [[:Category:JModelica \| JModelica code]] at [[Annihilation of calcium oscillations (jModelica)]]		* [[:Category:JModelica \| JModelica code]] at [[Annihilation of calcium oscillations (jModelica)]]